Stem-loop sbi-MIR166f

Accession

MI0001569

Description

Sorghum bicolor sbi-MIR166f precursor miRNA

Literature search

6 open access papers mention sbi-MIR166f
(15 sentences)

Sequence

5029314 reads, 130509.0 reads per million, 50 experiments

ccuuggucauggggguuuguggGGAAUGUUGGCUGGCUCGAGGcauccgcguccuggcuugcagaucguuuugccugcuaccggaaagaucgagaggcgUCGGACCAGGCUUCAUUCCUCgcaaaccggugcauccaug
.......(((((((((((((((((((((..(.((((.((((.((.((((..(((((((..(((((....)))))..))))..))).....)).)).)).)))).)))).)..)))))))))))))))......))))))

Structure

ccuuggu      ------               UU G    C    G  a  -  ---cg   --    uu     u 
       cauggg      gguuuguggGGAAUG  G CUGG UCGA Gc uc cg     ucc  uggc  gcaga c
       ||||||      |||||||||||||||  | |||| |||| || || ||     |||  ||||  |||||  
       guaccu      ccaaacgCUCCUUAC  C GACC GGCU cg ag gc     agg  aucg  cguuu g
-------      acgugg               UU G    A    g  g  a  uagaa   cc    uc     u 

Annotation confidence High

Genome context

chr4: 64857783-64857921 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR166f

Mature sbi-miR166f-5p

• Accession: MIMAT0056383
• Description: Sorghum bicolor sbi-miR166f-5p mature miRNA
• Sequence: 23 - GGAAUGUUGGCUGGCUCGAGG - 43
• Evidence: experimental ; unknown

Mature sbi-miR166f-3p

• Accession: MIMAT0001465
• Description: Sorghum bicolor sbi-miR166f-3p mature miRNA
• Sequence: 100 - UCGGACCAGGCUUCAUUCCUC - 120
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13