Stem-loop sbi-MIR171c

Accession

MI0001567

Description

Sorghum bicolor sbi-MIR171c precursor miRNA

Literature search

2 open access papers mention sbi-MIR171c
(3 sentences)

Sequence

18826 reads, 621.0 reads per million, 50 experiments

agaacgagacgacauggCAUGGUAUUGACUUGGCUCAUCUcucauccacagcaaacuucacaagugccuGAGGUGAGCCGAGCCAAUAUCacuucaugucaucuagcgu
...((((((.(((((((..((((((((.(((((((((((((.....(((..............)))...))))))))))))).))))))))..))))))).)))..)))

Structure

aga   --   c       CA        A             ucauc   agcaaa 
   acg  aga gacaugg  UGGUAUUG CUUGGCUCAUCUc     cac      c
   |||  ||| |||||||  |||||||| |||||||||||||     |||       
   ugc  ucu cuguacu  aCUAUAAC GAGCCGAGUGGAG     gug      u
---   ga   a       uc        C             --ucc   aacacu 

Annotation confidence Medium

Genome context

chr2: 17069962-17070070 [-]

Mature sbi-miR171c-5p

• Accession: MIMAT0056382
• Description: Sorghum bicolor sbi-miR171c-5p mature miRNA
• Sequence: 18 - CAUGGUAUUGACUUGGCUCAUCU - 40
• Evidence: experimental ; unknown

Mature sbi-miR171c-3p

• Accession: MIMAT0001463
• Description: Sorghum bicolor sbi-miR171c-3p mature miRNA
• Sequence: 70 - GAGGUGAGCCGAGCCAAUAUC - 90
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13