Stem-loop sbi-MIR171a

Accession

MI0001566

Description

Sorghum bicolor sbi-MIR171a precursor miRNA

Literature search

2 open access papers mention sbi-MIR171a
(7 sentences)

Sequence

23439 reads, 719.0 reads per million, 50 experiments

uugguuggcugagagagugcgaUGUUGGCAUGGUUCAAUCAAAucaucgcccggcaaggugacuuaaauuuugcgcuuucgaucgaucgaggugcagggagguguuuccaggcaccguguuUGAUUGAGCCGUGCCAAUAUCacaaccuucucuagccuau
......(((((((((.(((.((((((((((((((((((((((((..(((((......))))).......(((((((((.(((....))))))))))))..((((((....))))))..)))))))))))))))))))))))).).)).))))).))))...

Structure

uugguu    -     a  - c                        caucgcccggcaaggugacuuaaau         u   u 
      ggcu gagag gu g gaUGUUGGCAUGGUUCAAUCAAAu                         uuugcgcuu cga c
      |||| ||||| || | ||||||||||||||||||||||||                         ||||||||| |||  
      ccga cucuu ca c CUAUAACCGUGCCGAGUUAGUuug                         ggacgugga gcu g
---uau    u     c  a a                        -----ugccacggaccuuuguggag         -   a 

Annotation confidence High

Genome context

chr1: 7802995-7803155 [-]

Mature sbi-miR171a-5p

• Accession: MIMAT0056381
• Description: Sorghum bicolor sbi-miR171a-5p mature miRNA
• Sequence: 23 - UGUUGGCAUGGUUCAAUCAAA - 43
• Evidence: experimental ; unknown

Mature sbi-miR171a-3p

• Accession: MIMAT0001462
• Description: Sorghum bicolor sbi-miR171a-3p mature miRNA
• Sequence: 122 - UGAUUGAGCCGUGCCAAUAUC - 142
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13