Stem-loop sbi-MIR171d

Accession

MI0001565

Description

Sorghum bicolor sbi-MIR171d precursor miRNA

Literature search

2 open access papers mention sbi-MIR171d
(3 sentences)

Sequence

44086 reads, 1033.0 reads per million, 50 experiments

auaauggaauaguagcuaugaUGUUGGCUCGGCUCACUCAGAccaccucuccgauccucagcucguguccauugcgacaucgaucauguauauaugucgcuggucgugguuucUGAUUGAGCCGUGCCAAUAUCucaguacucuuccauauau
...((((((.((((.((..(((((((((.(((((((.(((((((((.....(((........))).(.(((..(((((((..((.....))..)))))))))).)))))..))))).))))))).)))))))))..)))))).))))))....

Structure

-aua      u    g  au         U       C     --    cucuccgauccucagcucgu u   uu       cg  c 
    auggaa agua cu  gaUGUUGGC CGGCUCA UCAGA  ccac                    g cca  gcgacau  au a
    |||||| |||| ||  ||||||||| ||||||| |||||  ||||                    | |||  |||||||  || u
    uaccuu ucau ga  CUAUAACCG GCCGAGU AGUcu  ggug                    c ggu  cgcugua  ua g
uaua      c    -  cu         U       U     uu    -------------------- u   --       ua  u 

Annotation confidence High

Genome context

chr1: 78121346-78121498 [-]

Mature sbi-miR171d-5p

• Accession: MIMAT0056380
• Description: Sorghum bicolor sbi-miR171d-5p mature miRNA
• Sequence: 22 - UGUUGGCUCGGCUCACUCAGA - 42
• Evidence: experimental ; unknown

Mature sbi-miR171d-3p

• Accession: MIMAT0001461
• Description: Sorghum bicolor sbi-miR171d-3p mature miRNA
• Sequence: 114 - UGAUUGAGCCGUGCCAAUAUC - 134
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13