Stem-loop sbi-MIR171b

Accession

MI0001564

Description

Sorghum bicolor sbi-MIR171b precursor miRNA

Literature search

3 open access papers mention sbi-MIR171b
(7 sentences)

Sequence

21262 reads, 701.0 reads per million, 50 experiments

auggccgccgcgcgcgacgggguAUUGGCGCGGUUCAAUUCGAGAGCUcgagcccuagacuagacgccagggagagagggggcucugcucucUGAUUGAGCCGUGCCAAUAUCacgucccgcuugaauggcu
..(((((.((.(((.((((.((((((((((((((((((((.((((((..(((((((...((...(.....)...))..))))))).)))))).)))))))))))))))))))).)))).))).))..)))))

Structure

au     -c  c   c    g                    C      Uc       aga  aga g 
  ggccg  cg gcg gacg gguAUUGGCGCGGUUCAAUU GAGAGC  gagcccu   cu   c c
  |||||  || ||| |||| |||||||||||||||||||| ||||||  |||||||   ||   | c
  ucggu  gu cgc cugc CUAUAACCGUGCCGAGUUAG cucucg  cucgggg   ga   g a
--     aa  u   c    a                    U      -u       -ga  gag g 

Annotation confidence High

Genome context

chr7: 7691161-7691292 [+]

Mature sbi-miR171b-5p

• Accession: MIMAT0056379
• Description: Sorghum bicolor sbi-miR171b-5p mature miRNA
• Sequence: 24 - AUUGGCGCGGUUCAAUUCGAGAGCU - 48
• Evidence: experimental ; unknown

Mature sbi-miR171b-3p

• Accession: MIMAT0001460
• Description: Sorghum bicolor sbi-miR171b-3p mature miRNA
• Sequence: 93 - UGAUUGAGCCGUGCCAAUAUC - 113
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13