Stem-loop sbi-MIR168

Accession

MI0001556

Description

Sorghum bicolor sbi-MIR168 precursor miRNA

Literature search

3 open access papers mention sbi-MIR168
(3 sentences)

Sequence

23759356 reads, 178871.0 reads per million, 50 experiments

gccgccgcgccgccucgggcUCGCUUGGUGCAGAUCGGGACcugccgccgugcucggacgggacagauCCCGCCUUGCACCAAGUGAAUccgagccggagcagccg
...((.((.(((.((((((.(((((((((((((..(((((.(((((((((....))).)))..))).)))))..))))))))))))).)))))).))).)).))..

Structure

gcc  c  g   c      c             AU     C   --   -   u 
   gc gc ccg cucggg UCGCUUGGUGCAG  CGGGA cug  ccg ccg g
   || || ||| |||||| |||||||||||||  ||||| |||  ||| |||  
   cg cg ggc gagccU AGUGAACCACGUU  GCCCu gac  ggc ggc c
-gc  a  a   c      A             CC     a   ag   a   u 

Annotation confidence High

Genome context

chr4: 2247075-2247180 [-]

Mature sbi-miR168-5p

• Accession: MIMAT0001452
• Description: Sorghum bicolor sbi-miR168-5p mature miRNA
• Sequence: 21 - UCGCUUGGUGCAGAUCGGGAC - 41
• Evidence: not_experimental

Mature sbi-miR168-3p

• Accession: MIMAT0056374
• Description: Sorghum bicolor sbi-miR168-3p mature miRNA
• Sequence: 69 - CCCGCCUUGCACCAAGUGAAU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13