Stem-loop sbi-MIR167c

Accession

MI0001555

Description

Sorghum bicolor sbi-MIR167c precursor miRNA

Literature search

3 open access papers mention sbi-MIR167c
(6 sentences)

Sequence

2112457 reads, 28970.0 reads per million, 50 experiments

cuuugcuggugugagagguUGAAGCUGCCAGCAUGAUCUGguggccggccggccggcgucucucaagugcgcucggaucggagacgcgucgccAGAUCAUGUUGCAGCUUCACUcucucgcaaccaccaaa
..(((.((((((((((((.(((((((((.((((((((((((((((((.(((((((((((((....)).)))).))).))))...)).))))))))))))))))))))))))).)))))))).)))).))).

Structure

cu   c    -        u         C                -  --g    -   -    -  c 
  uug uggu gugagagg UGAAGCUGC AGCAUGAUCUGguggc cg   ccgg ccg gcgu cu u
  ||| |||| |||||||| ||||||||| |||||||||||||||| ||   |||| ||| |||| ||  
  aac acca cgcucucU ACUUCGACG UUGUACUAGAccgcug gc   ggcu ggc cgcg ga c
-a   c    a        C         -                c  aga    a   u    u  a 

Annotation confidence High

Genome context

chr10: 56429519-56429649 [+]

Mature sbi-miR167c-5p

• Accession: MIMAT0001451
• Description: Sorghum bicolor sbi-miR167c-5p mature miRNA
• Sequence: 20 - UGAAGCUGCCAGCAUGAUCUG - 40
• Evidence: not_experimental

Mature sbi-miR167c-3p

• Accession: MIMAT0056373
• Description: Sorghum bicolor sbi-miR167c-3p mature miRNA
• Sequence: 94 - AGAUCAUGUUGCAGCUUCACU - 114
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13