Stem-loop sbi-MIR167e

Accession

MI0001554

Description

Sorghum bicolor sbi-MIR167e precursor miRNA

Literature search

4 open access papers mention sbi-MIR167e
(7 sentences)

Sequence

4350871 reads, 63670.0 reads per million, 50 experiments

aguggugcaccacaaguuggUGAAGCUGCCAGCAUGAUCUGaugucuuuauauauauuaauuaccucugauuucucccugacuguuauggaucgaugaauucagauaugaggggaaggaagaaagaggaauaaugagcaucAGGUCAUGCUGUAGUUUCAUCcgcuggugggagcacau
....((((.((((.(((.(((((((((((.((((((((((((((.(((.......((((.((.(((((..(((((((((...((((.(((((......)))))))))...)))).)))))...))))))))))))))))))))))))))))))))))))))).))).))))..))))..

Structure

agug    -a    a   u           C              u   uauauau    a  a     -ga     -    gac    a     cg 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGaug cuu       auua uu ccucu   uuucu cccu   uguu uggau  a
    ||||  |||| ||| ||||||||||| |||||||||||||| |||       |||| || |||||   ||||| ||||   |||| |||||   
    cacg  ggug ucg CUACUUUGAUG UCGUACUGGAcuac gag       uaau aa ggaga   aagga gggg   auag acuua  u
--ua    ag    g   c           -              -   -------    -  -     aag     a    agu    -     ag 

Annotation confidence High

Genome context

chr8: 59225502-59225680 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR167e

Mature sbi-miR167e-5p

• Accession: MIMAT0001450
• Description: Sorghum bicolor sbi-miR167e-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: not_experimental

Mature sbi-miR167e-3p

• Accession: MIMAT0056372
• Description: Sorghum bicolor sbi-miR167e-3p mature miRNA
• Sequence: 142 - AGGUCAUGCUGUAGUUUCAUC - 162
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13