Stem-loop sbi-MIR167f

Accession

MI0001552

Description

Sorghum bicolor sbi-MIR167f precursor miRNA

Literature search

3 open access papers mention sbi-MIR167f
(8 sentences)

Sequence

3132064 reads, 43492.0 reads per million, 50 experiments

uccggugcacuagagguggaUGAAGCUGCCAGCAUGAUCUGagaaacuagugcuugauccuuuuacugauuuccaucuagccugcaucuauauauauaccuugaugcaugaaucauggucugaugauaguuaagcgagaucAGAUCGUCUGGCAGUUUCAUCUucuuauggcagcacaa
....((((.(((.(((.(((((((((((((((.(((((((((........((((((((...............((((..(((((((((..............))))))........)))..))))...))))))))...)))))))))))))))))))))))).))).)))..))))..

Structure

uccg    -a   g   u               C         gaaacuag        ccuuuuacugauuuc    ua   --------      uauaua 
    gugc  cua agg ggaUGAAGCUGCCAG AUGAUCUGa        ugcuugau               cauc  gcc        ugcauc      u
    ||||  ||| ||| ||||||||||||||| |||||||||        ||||||||               ||||  |||        ||||||       
    cacg  ggu uuc UCUACUUUGACGGUC UGCUAGAcu        gcgaauug               guag  ugg        acguag      a
--aa    ac   a   u               -         -----aga        ------------aua    uc   uacuaagu      uuccau 

Annotation confidence High

Genome context

chr1: 26092744-26092922 [+]

Mature sbi-miR167f-5p

• Accession: MIMAT0001448
• Description: Sorghum bicolor sbi-miR167f-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: not_experimental

Mature sbi-miR167f-3p

• Accession: MIMAT0056370
• Description: Sorghum bicolor sbi-miR167f-3p mature miRNA
• Sequence: 142 - AGAUCGUCUGGCAGUUUCAUCU - 163
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13