Stem-loop sbi-MIR167d

Accession

MI0001551

Description

Sorghum bicolor sbi-MIR167d precursor miRNA

Literature search

3 open access papers mention sbi-MIR167d
(8 sentences)

Sequence

4284865 reads, 60297.0 reads per million, 50 experiments

guggugcauccucuaguagcUGAAGCUGCCAGCAUGAUCUGaugaggugagguuuauuugcuaguuggucacaggcuaacagcaugauggcccaacaaaucaacgaucaGAUCAUGCUGUGCAGUUUCAUCUGcucguggaugcacau
...((((((((.(.(((((.(((((((((((((((((((((((((..((.((((....((((.(((((((...)))))))))))....))))...))..)))....))))))))))))).))))))))).))))).).))))))))..

Structure

gug        u u     c         -             ----   gg  --a    uauu    a       a 
   gugcaucc c aguag UGAAGCUGC CAGCAUGAUCUGa    uga  ug   gguu    ugcu guugguc  
   |||||||| | ||||| ||||||||| |||||||||||||    |||  ||   ||||    |||| ||||||| c
   cacguagg g ucGUC ACUUUGACG GUCGUACUAGacu    acu  ac   ccgg    acga caaucgg  
-ua        u c     U         U             agca   aa  aac    uagu    -       a 

Annotation confidence High

Genome context

chr2: 4980559-4980706 [-]

Mature sbi-miR167d-5p

• Accession: MIMAT0001447
• Description: Sorghum bicolor sbi-miR167d-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: not_experimental

Mature sbi-miR167d-3p

• Accession: MIMAT0056369
• Description: Sorghum bicolor sbi-miR167d-3p mature miRNA
• Sequence: 110 - GAUCAUGCUGUGCAGUUUCAUCUG - 133
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13