Stem-loop sbi-MIR156d

Accession

MI0001548

Description

Sorghum bicolor sbi-MIR156d precursor miRNA

Literature search

8 open access papers mention sbi-MIR156d
(24 sentences)

Sequence

49319 reads, 371.0 reads per million, 49 experiments

uggaccucuggagugagugaUGACAGAAGAGAGAGAGCACAacccagcaccagcgaggagaagccucgcuucugcgagggccguguGCUCUCUGCUCUCACUGUCAUCgccgacaggccacccaa
(((.(((.....((..((((((((((.((((((((((((((.(((.(((..(((((((.....)))))))..)))..)))...)))))))))).))))..))))))))))..)))))))).....

Structure

-----   a   cugga  ga          -A    -          --a   -a   cc       a 
     ugg ccu     gu  gugaUGACAG  AGAG AGAGAGCACA   ccc  gca  agcgagg g
     ||| |||     ||  ||||||||||  |||| ||||||||||   |||  |||  ||||||| a
     acc gga     ca  cgCUACUGUC  UCUC UCUCUCGugu   ggg  cgu  ucgcucc a
aaccc   -   -----  gc          AC    G          gcc   ag   cu       g 

Annotation confidence High

Genome context

chr2: 62805800-62805924 [-]

Mature sbi-miR156d-5p

• Accession: MIMAT0001444
• Description: Sorghum bicolor sbi-miR156d-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGAGAGCACA - 41
• Evidence: not_experimental

Mature sbi-miR156d-3p

• Accession: MIMAT0056367
• Description: Sorghum bicolor sbi-miR156d-3p mature miRNA
• Sequence: 87 - GCUCUCUGCUCUCACUGUCAUC - 108
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13