Stem-loop sbi-MIR399g

Accession

MI0001547

Description

Sorghum bicolor sbi-MIR399g precursor miRNA

Literature search

3 open access papers mention sbi-MIR399g
(5 sentences)

Sequence

157 reads, 7.0 reads per million, 10 experiments

ccagaugugcacuugcauugcuGGGCAACUUCUCCUUUGGCAGAUgcgcaaugugcuccgacccuggggcuucuuccgcgccuacUGCCAAAGGAAAUUUGCCCCGgaauucaccugcacagcca
.....((((((..((.(((.(.((((((.((.((((((((((((.((((.....((((((....)))))).......)))).).))))))))))))).)))))).).))).))..))))))....

Structure

ccaga      cu  c   g u      C  C           - U    --aaugu      a 
     ugugca  ug auu c GGGCAA UU UCCUUUGGCAG A gcgc       gcuccg c
     ||||||  || ||| | |||||| || ||||||||||| | ||||       ||||||  
     acacgu  ac uaa G CCCGUU AA AGGAAACCGUc u cgcg       cggggu c
-accg      cc  u   g C      U  -           a c    ccuucuu      c 

Annotation confidence High

Genome context

chr9: 55511807-55511931 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sbi-MIR399g

Mature sbi-miR399g-5p

• Accession: MIMAT0056366
• Description: Sorghum bicolor sbi-miR399g-5p mature miRNA
• Sequence: 23 - GGGCAACUUCUCCUUUGGCAGAU - 45
• Evidence: experimental ; unknown

Mature sbi-miR399g-3p

• Accession: MIMAT0001443
• Description: Sorghum bicolor sbi-miR399g-3p mature miRNA
• Sequence: 86 - UGCCAAAGGAAAUUUGCCCCG - 106
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13