Stem-loop sbi-MIR399b

Accession

MI0001546

Description

Sorghum bicolor sbi-MIR399b precursor miRNA

Literature search

3 open access papers mention sbi-MIR399b
(6 sentences)

Sequence

39056 reads, 330.0 reads per million, 40 experiments

uagcucagggugagaaucacaGUGCAGCUCUCCUCUGGCAUGaaggcugagagagucaugagcaguuuucuggccuuucccUGCCAAAGGAGAGCUGCCCUGccauucauuagcccugcaa
.....((((((..((((..(((.(((((((((((.(((((.(((((((.((((((.(.......))))))))))))))...))))).))))))))))).)))..))))....))))))...

Structure

uagcu      --ga    ca   U           C     --U       g      u au 
     cagggu    gaau  caG GCAGCUCUCCU UGGCA   Gaaggcu agagag c  g
     ||||||    ||||  ||| ||||||||||| |||||   ||||||| |||||| |  a
     gucccg    cuua  GUC CGUCGAGAGGA ACCGU   uuuccgg ucuuuu g  g
--aac      auua    cc   C           A     ccc       -      - ac 

Annotation confidence High

Genome context

chr4: 9764453-9764573 [-]

Mature sbi-miR399b-5p

• Accession: MIMAT0056365
• Description: Sorghum bicolor sbi-miR399b-5p mature miRNA
• Sequence: 22 - GUGCAGCUCUCCUCUGGCAUG - 42
• Evidence: experimental ; unknown

Mature sbi-miR399b-3p

• Accession: MIMAT0001442
• Description: Sorghum bicolor sbi-miR399b-3p mature miRNA
• Sequence: 82 - UGCCAAAGGAGAGCUGCCCUG - 102
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13