Stem-loop sbi-MIR399f

Accession

MI0001545

Description

Sorghum bicolor sbi-MIR399f precursor miRNA

Literature search

3 open access papers mention sbi-MIR399f
(5 sentences)

Sequence

4981 reads, 90.0 reads per million, 17 experiments

cauaugcgagucgaggauuaccGGGCCAUUUCUCCUUGGGCAGAguaauugaauuuuacuuugcuggauccgguuugcucUGCCAAAGGAGAUUUGCCCAGcaauccacauuuguaauau
....(((((((.(.(((((.(.((((.(..(((((((.(((((((((((((.((((.........)))).))).)))))))))).)))))))..))))).).))))).))))))))....

Structure

caua       c a     a c    C UU       G          -   a    uac 
    ugcgagu g ggauu c GGGC A  UCUCCUU GGCAGAguaa uug auuu   u
    ||||||| | ||||| | |||| |  ||||||| |||||||||| ||| ||||   u
    auguuua c ccuaa G CCCG U  AGAGGAA CCGUcucguu ggc uagg   u
uaua       - a     c A    - UU       A          u   c    ucg 

Annotation confidence High

Genome context

chr10: 48187250-48187369 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR399f

Mature sbi-miR399f-5p

• Accession: MIMAT0056364
• Description: Sorghum bicolor sbi-miR399f-5p mature miRNA
• Sequence: 23 - GGGCCAUUUCUCCUUGGGCAGA - 44
• Evidence: experimental ; unknown

Mature sbi-miR399f-3p

• Accession: MIMAT0001441
• Description: Sorghum bicolor sbi-miR399f-3p mature miRNA
• Sequence: 81 - UGCCAAAGGAGAUUUGCCCAG - 101
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13