Stem-loop sbi-MIR399e

Accession

MI0001544

Description

Sorghum bicolor sbi-MIR399e precursor miRNA

Literature search

3 open access papers mention sbi-MIR399e
(5 sentences)

Sequence

4790 reads, 84.0 reads per million, 17 experiments

acaugcggggccaugcauuaccGGGUGGGUCUCCUCUGGCAGUaacuuggcuggucgccugguccaugauaccugcgugcagacacUGCCAAAGGAGAUUUGCCCAGcaaugcaguuuugaguccc
......(((((((((((((.(.(((((((((((((.(((((((.....(.(((..(((..(((.......))).)))..))).)))))))).))))))))))))).).))))))....)).)))))

Structure

acaugc     -  ----      a c             C       aacuu g   gu   cu   cc 
      ggggc ca    ugcauu c GGGUGGGUCUCCU UGGCAGU     g cug  cgc  ggu  a
      ||||| ||    |||||| | ||||||||||||| |||||||     | |||  |||  |||  u
      cccug gu    acguaa G CCCGUUUAGAGGA ACCGUca     c gac  gcg  cca  g
------     a  uuug      c A             A       ----- a   gu   -u   ua 

Annotation confidence High

Genome context

chr9: 55507371-55507496 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sbi-MIR399e

Mature sbi-miR399e-5p

• Accession: MIMAT0056363
• Description: Sorghum bicolor sbi-miR399e-5p mature miRNA
• Sequence: 23 - GGGUGGGUCUCCUCUGGCAGU - 43
• Evidence: experimental ; unknown

Mature sbi-miR399e-3p

• Accession: MIMAT0001440
• Description: Sorghum bicolor sbi-miR399e-3p mature miRNA
• Sequence: 87 - UGCCAAAGGAGAUUUGCCCAG - 107
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13