Stem-loop sbi-MIR399d

Accession

MI0001543

Description

Sorghum bicolor sbi-MIR399d precursor miRNA

Literature search

3 open access papers mention sbi-MIR399d
(5 sentences)

Sequence

13019 reads, 195.0 reads per million, 50 experiments

gugcaggcugaagacaguuguaGGCAGCUCUCCUCUGGCAGGcggucaucgucgucgucaucgacggcugguucuguguucauccggauccaucgugcagccgugcaugcaugcaguaauauucgguuacaugcaugcauuaugcacgcacguacgucgucguccUGCCAAAGGAGAGUUGCCCUGcgacugucuccagcuuccu
....((((((.(((((((((((((((((((((((.((((((((((.(...(((((((....)))))))(((.((((........)))).))).(((((...(((((((((((((((((((.....))))).))))))))...))))))...)))))..)))).))))))).)))))))))).))))))))))))).))))))...

Structure

gugc      a             -          C       -   u aucgucgucgucaucgacggcugguucuguguucauccggauccau     agc      ---        -     a 
    aggcug agacaguuguaGG CAGCUCUCCU UGGCAGG cgg c                                              cgugc   cgugca   ugcaugca guaau u
    |||||| ||||||||||||| |||||||||| ||||||| ||| |                                              |||||   ||||||   |||||||| ||||| u
    uucgac ucugucagcGUCC GUUGAGAGGA ACCGUcc gcu g                                              gcaug   gcacgu   acguacgu cauug c
-ucc      c             C          A       u   - --------------------------------------------cu     cac      auu        a     g 

Annotation confidence High

Genome context

chr10: 1578286-1578490 [+]

Mature sbi-miR399d-5p

• Accession: MIMAT0056362
• Description: Sorghum bicolor sbi-miR399d-5p mature miRNA
• Sequence: 23 - GGCAGCUCUCCUCUGGCAGG - 42
• Evidence: experimental ; unknown

Mature sbi-miR399d-3p

• Accession: MIMAT0001439
• Description: Sorghum bicolor sbi-miR399d-3p mature miRNA
• Sequence: 166 - UGCCAAAGGAGAGUUGCCCUG - 186
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13