Stem-loop sbi-MIR399c

Accession

MI0001542

Description

Sorghum bicolor sbi-MIR399c precursor miRNA

Literature search

3 open access papers mention sbi-MIR399c
(5 sentences)

Sequence

4450 reads, 90.0 reads per million, 45 experiments

cauaugcugagcaugaauuacaGGGUACAUCUCCUUUGGCACAgaugcaugcagcagaaugcauauaugcauaugcgaaacugucgagcgUGCCAAAGGAGAAUUGCCCUGcgauucuaggcucugcaau
....(((.((((..(((((.(((((((..(((((((((((((....((.((..((((..(((((((....)))))))...)))))).)))))))))))))))..))))))).)))))...)))).)))..

Structure

caua   u    -au     a       CA             Agau  a  ca    -aa       a 
    ugc gagc   gaauu caGGGUA  UCUCCUUUGGCAC    gc ug  gcag   ugcauau u
    ||| ||||   ||||| |||||||  |||||||||||||    || ||  ||||   |||||||  
    acg cucg   cuuag GUCCCGU  AGAGGAAACCGUg    cg gc  uguc   gcguaua g
--ua   u    gau     c       UA             ----  a  --    aaa       c 

Annotation confidence High

Genome context

chr9: 55505804-55505933 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sbi-MIR399c

Mature sbi-miR399c-5p

• Accession: MIMAT0056361
• Description: Sorghum bicolor sbi-miR399c-5p mature miRNA
• Sequence: 23 - GGGUACAUCUCCUUUGGCACA - 43
• Evidence: experimental ; unknown

Mature sbi-miR399c-3p

• Accession: MIMAT0001438
• Description: Sorghum bicolor sbi-miR399c-3p mature miRNA
• Sequence: 91 - UGCCAAAGGAGAAUUGCCCUG - 111
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13