Stem-loop sbi-MIR396c

Accession

MI0001540

Description

Sorghum bicolor sbi-MIR396c precursor miRNA

Literature search

3 open access papers mention sbi-MIR396c
(8 sentences)

Sequence

107082 reads, 4119.0 reads per million, 50 experiments

uucaaguccaugccaugccuUUCCACAGCUUUCUUGAACUUcuccuccuccuccucucucuuagaaggguagcuuugaacaucucucucucucucucucucucucucucucucucuccaaagaaGGUCAAGAAAGCUGUGGGAAGaaaugacauaacaagga
......((((((.(((..(((((((((((((((((((.(((((.......(((((.(((...))).))).))....((.....))...................................))))).)))))))))))))))))))..))).))).....)))

Structure

uucaag   -----   c   gc                   A     -----------------------------------------ccuccuc  -   c   c 
      ucc     aug cau  cuUUCCACAGCUUUCUUGA CUUcu                                                cu ccu ucu  
      |||     ||| |||  ||||||||||||||||||| |||||                                                || ||| ||| u
      agg     uac gua  GAAGGGUGUCGAAAGAACU Gaaga                                                ga ggg aga  
------   aacaa   a   aa                   G     aaccucucucucucucucucucucucucucucucucucuacaaguuuc  u   a   u 

Annotation confidence High

Genome context

chr4: 66726748-66726909 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR396c

Mature sbi-miR396c-5p

• Accession: MIMAT0001436
• Description: Sorghum bicolor sbi-miR396c-5p mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUU - 41
• Evidence: not_experimental

Mature sbi-miR396c-3p

• Accession: MIMAT0056359
• Description: Sorghum bicolor sbi-miR396c-3p mature miRNA
• Sequence: 125 - GGUCAAGAAAGCUGUGGGAAG - 145
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13