Stem-loop sbi-MIR396a

Accession

MI0001539

Description

Sorghum bicolor sbi-MIR396a precursor miRNA

Literature search

4 open access papers mention sbi-MIR396a
(14 sentences)

Sequence

165568 reads, 5313.0 reads per million, 50 experiments

acauggcccuccuugccgucUUCCACAGCUUUCUUGAACUGcaugcugguagugcugugugcauccguuccaauauuccaagaggcaGUUCAAUAAAGCUGUGGGAAAUugcagagagagaccag
...((((.(((.((((.((.((((((((((((.(((((((((....(((.((((.((.(.((....)).))).)))))))....))))))))).)))))))))))).)).)))).))).).))).

Structure

aca   - c   c    c  c            C         augc   u    c  u u  a 
   ugg c cuc uugc gu UUCCACAGCUUU UUGAACUGc    ugg agug ug g gc u
   ||| | ||| |||| || |||||||||||| |||||||||    ||| |||| || | ||  
   acc g gag gacg UA AGGGUGUCGAAA AACUUGacg    acc uuau ac c ug c
--g   a a   a    u  A            U         gaga   -    a  - u  c 

Annotation confidence High

Genome context

chr4: 66733975-66734099 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR396a

Mature sbi-miR396a-5p

• Accession: MIMAT0001435
• Description: Sorghum bicolor sbi-miR396a-5p mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUG - 41
• Evidence: not_experimental

Mature sbi-miR396a-3p

• Accession: MIMAT0056358
• Description: Sorghum bicolor sbi-miR396a-3p mature miRNA
• Sequence: 88 - GUUCAAUAAAGCUGUGGGAAAU - 109
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13