Stem-loop sbi-MIR396b

Accession

MI0001538

Description

Sorghum bicolor sbi-MIR396b precursor miRNA

Literature search

4 open access papers mention sbi-MIR396b
(14 sentences)

Sequence

165115 reads, 5297.0 reads per million, 50 experiments

agauggccuucuuugugaucUUCCACAGCUUUCUUGAACUGcaucucuaagaggagcagcuugaacucucuaccugcaugagcaggugcaGUUCAAUAAAGCUGUGGGAAAcugcagagagaggccaa
...((((((((((((((...((((((((((((.(((((((((..........((((.((......))))))((((((....))))))))))))))).))))))))))))...)))))))).)))))).

Structure

aga      -        auc            C         aucucuaagaggagcagcuugaacucucu      a 
   uggccu ucuuugug   UUCCACAGCUUU UUGAACUGc                             accugc u
   |||||| ||||||||   |||||||||||| |||||||||                             ||||||  
   accgga agagacgu   AGGGUGUCGAAA AACUUGacg                             uggacg g
--a      g        cAA            U         -----------------------------      a 

Annotation confidence High

Genome context

chr10: 4466694-4466821 [+]

Mature sbi-miR396b-5p

• Accession: MIMAT0001434
• Description: Sorghum bicolor sbi-miR396b-5p mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUG - 41
• Evidence: not_experimental

Mature sbi-miR396b-3p

• Accession: MIMAT0056357
• Description: Sorghum bicolor sbi-miR396b-3p mature miRNA
• Sequence: 91 - GUUCAAUAAAGCUGUGGGAAA - 111
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13