Stem-loop sbi-MIR394a

Accession

MI0001531

Description

Sorghum bicolor sbi-MIR394a precursor miRNA

Literature search

1 open access papers mention sbi-MIR394a
(2 sentences)

Sequence

53818 reads, 2113.0 reads per million, 50 experiments

cuuuacauacugagaguuccUUGGCAUUCUGUCCACCUCCuugcccaucgucagauauauguguugcuuuuggAGGUGGACAUACUGCCAAUGgagcuguguaggccucu
.........((((.((((((((((((...(((((((((((.....((.((.((......)))).)).....)))))))))))...)))))).)))))).).)))......

Structure

cuuuacaua   - g      -      UUC           uugcc  u  u  ga 
         cug a aguucc UUGGCA   UGUCCACCUCC     ca cg ca  u
         ||| | |||||| ||||||   |||||||||||     || || ||   
         gau u ucgagG AACCGU   ACAGGUGGAgg     gu gu gu  a
---ucuccg   g g      U      CAU           uuuuc  u  -  au 

Annotation confidence Medium

Genome context

chr2: 66830969-66831078 [+]

Mature sbi-miR394a-5p

• Accession: MIMAT0001427
• Description: Sorghum bicolor sbi-miR394a-5p mature miRNA
• Sequence: 21 - UUGGCAUUCUGUCCACCUCC - 40
• Evidence: not_experimental

Mature sbi-miR394a-3p

• Accession: MIMAT0056352
• Description: Sorghum bicolor sbi-miR394a-3p mature miRNA
• Sequence: 74 - AGGUGGACAUACUGCCAAUG - 93
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13