Stem-loop sbi-MIR393a

Accession

MI0001530

Description

Sorghum bicolor sbi-MIR393a precursor miRNA

Literature search

1 open access papers mention sbi-MIR393a
(1 sentences)

Sequence

4345 reads, 192.0 reads per million, 50 experiments

acaaugccuggaggaagcaUCCAAAGGGAUCGCAUUGAUCcgucacuccuuccauucuaucauggguggucgucgucuacaaggacuucguucccgacggAUCAUGCGAUCCUUUUGGAGGcuuccucuagacauuacu
..((((.(((((((((((.((((((((((((((((.((((((((.......((((((......)))))).((..((((....))))..)).....)))))))))))))))))))))))).))))))))))).))))...

Structure

-ac    c           a                U        -------------------acuccuu      ua 
   aaug cuggaggaagc UCCAAAGGGAUCGCAU GAUCcguc                          ccauuc  u
   |||| ||||||||||| |||||||||||||||| ||||||||                          ||||||   
   uuac gaucuccuucG AGGUUUUCCUAGCGUA CUAggcag                          gguggg  c
uca    a           G                -        cccuugcuucaggaacaucugcugcu      ua 

Annotation confidence Medium

Genome context

chr3: 6442916-6443054 [+]

Mature sbi-miR393a-5p

• Accession: MIMAT0001426
• Description: Sorghum bicolor sbi-miR393a-5p mature miRNA
• Sequence: 20 - UCCAAAGGGAUCGCAUUGAUC - 40
• Evidence: not_experimental

Mature sbi-miR393a-3p

• Accession: MIMAT0056351
• Description: Sorghum bicolor sbi-miR393a-3p mature miRNA
• Sequence: 101 - AUCAUGCGAUCCUUUUGGAGG - 121
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13