miRBase entry: cbr-mir-41a

Stem-loop cbr-mir-41a

Accession

MI0001421

Description

Caenorhabditis briggsae cbr-mir-41a precursor miRNA

Sequence

ugaaagcaggucccaaaugccuuggugguuuuucgccguagugauacaacaucgaagccauacgauaUCACCGGGUGAAAAACUCCCAaggucgggacauuuuuauuugu
((((((...(((((....(((((((.(((((((((((...((((((.....(((........)))))))))..))))))))))).))))))).))))).)))))).....

Structure

-----      cag     aaau       u           gua      caaca   aag 
     ugaaag   guccc    gccuugg gguuuuucgcc   gugaua     ucg   c
     ||||||   |||||    ||||||| |||||||||||   ||||||     |||    
     auuuuu   caggg    uggaACC UCAAAAAGUGG   CACUau     agc   c
uguuu      --a     ---c       C           -GC      -----   aua

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context

chrII: 8378281-8378390 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-41a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-41a

Accession	MIMAT0001318
Description	Caenorhabditis briggsae cbr-miR-41a mature miRNA
Sequence	68 - UCACCGGGUGAAAAACUCCCA - 88
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008