miRBase entry: cbr-mir-38

Stem-loop cbr-mir-38

Accession

MI0001418

Description

Caenorhabditis briggsae cbr-mir-38 precursor miRNA

Sequence

gagccuggaccuguaccggguucucuuuguggugauaugacaacucauaaccauuccuuaUCACCGGGAGACAACCUGGUAUagguccagcgacuc
((((((((((((((((((((((.((((..((((((((.....................)))))))).)))).)))))))))))))))))).).)))

Structure

   - -                  c    ug        ugacaacuc 
gag c cuggaccuguaccggguu ucuu  uggugaua         a
||| | |||||||||||||||||| ||||  ||||||||         u
cuc g gaccuggaUAUGGUCCAA AGAG  GCCACUau         a
   a c                  C    -G        uccuuacca

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrII: 8377655-8377750 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-38

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-38

Accession	MIMAT0001315
Description	Caenorhabditis briggsae cbr-miR-38 mature miRNA
Sequence	61 - UCACCGGGAGACAACCUGGUAU - 82
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008