miRBase entry: cbr-mir-36

Stem-loop cbr-mir-36


Accession
MI0001416
Description
Caenorhabditis briggsae cbr-mir-36 precursor miRNA


Sequence

ugaaaccuucggaccauugugaauuuuugcugcgguguuacaacuaacaucuguaUCACCGGGUGAAAAUUCGCAAUgguccgauggguauuca
(((((((((((((((((((((((((((((((.(((((.((((.........)))).)))))))))))))))))))))))))))).)))).))))

Structure
    -    -                       g     u    acu 
ugaa accu ucggaccauugugaauuuuugcu cggug uaca   a
|||| |||| ||||||||||||||||||||||| ||||| ||||   a
acuu uggg agccuggUAACGCUUAAAAGUGG GCCAC augu   c
    a    u                       -     U    cua 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 teminal 3' end positions.

Genome context
chrII: 8377557-8377650 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-36
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-36

Accession MIMAT0001314
Description Caenorhabditis briggsae cbr-miR-36 mature miRNA
Sequence 56 - UCACCGGGUGAAAAUUCGCAAU - 77
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008