miRBase entry: cbr-mir-35a

Stem-loop cbr-mir-35a


Accession
MI0001415
Description
Caenorhabditis briggsae cbr-mir-35a precursor miRNA mir-35
Gene
family?
RF02254; mir-35


Sequence

uaguccaguucuggacauucgcggguuuuuuccuucggugauauucgaagaaucgcuaUCACCGGGUGAAAACUUGCAAGugucuugcuucgacuggucauuuugcuuguau
..(.(((((((.(((((((.((((((((((.((..((((((((..(((....))).)))))))))).)))))))))).))))))).)....)))))).).............

Structure
-----------ua u      ---- u       c          u  uu        uu   a 
             g ccaguu    c ggacauu gcggguuuuu cc  cggugaua  cga g
             | ||||||    | ||||||| |||||||||| ||  ||||||||  |||  
             c ggucag    g ucuguGA CGUUCAAAAG GG  GCCACUau  gcu a
uauguucguuuua u      cuuc u       A          U  --        -c   a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context
chrII: 8378407-8378518 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-35a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35a

Accession MIMAT0001313
Description Caenorhabditis briggsae cbr-miR-35a mature miRNA
Sequence 59 - UCACCGGGUGAAAACUUGCAAG - 80
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008