Stem-loop cbr-mir-240

Accession

MI0001408

Description

Caenorhabditis briggsae cbr-mir-240 precursor miRNA

Sequence

cgcugucuuuauuuugaaacuguuuucaaaucgagaauuucgaggccugaaugcaagaaccguuuugagcaUACUGGCCUCCAAAUUUUCGCUuugaauuuuaguuacgcgug
(((.((...........(((((..((((((.(((((((((.((((((.(.((((..(((....)))..)))).).)))))).))))))))).))))))...))))))))))..

Structure

--   u  cuuuauuuuga     -uu      u         c      u a    aa   c 
  cgc gu           aacug   uucaaa cgagaauuu gaggcc g augc  gaa c
  ||| ||           |||||   |||||| ||||||||| |||||| | ||||  |||  
  gcg ca           uugau   aaguuU GCUUUUAAA CUCCGG C Uacg  uuu g
gu   -  -----------     uuu      C         C      U A    ag   u 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context

chrX: 13610687-13610799 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-240

Mature cbr-miR-240

• Accession: MIMAT0001306
• Description: Caenorhabditis briggsae cbr-miR-240 mature miRNA
• Sequence: 72 - UACUGGCCUCCAAAUUUUCGCU - 93
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008