Stem-loop cbr-mir-246

Accession

MI0001397

Description

Caenorhabditis briggsae cbr-mir-246 precursor miRNA

Sequence

gaaaaguccuagugauaaaacagcaccuggccaauauuauguaauaucagaagcaaauugauuaUUACAUGUAUUGGGUAGGAGCUguucaagcuaugguuaaaugggu
.......((((((.....((((((.((((.(((((((.((((((((((((.......)))).))))))))))))))).)))).))))))...)))).))..........

Structure

---gaaaagu  -    gauaa      a    g       u        -    aa 
          cc uagu     aacagc ccug ccaauau auguaaua ucag  g
          || ||||     |||||| |||| ||||||| |||||||| ||||  c
          gg aucg     uugUCG GGAU GGUUAUG UACAUUau aguu  a
uggguaaauu  u    --aac      A    G       -        u    aa 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context

chrIV: 7431797-7431905 [-]

Mature cbr-miR-246

• Accession: MIMAT0001296
• Description: Caenorhabditis briggsae cbr-miR-246 mature miRNA
• Sequence: 65 - UUACAUGUAUUGGGUAGGAGCU - 86
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008