Stem-loop gga-mir-135a-1

Accession

MI0001231

Description

Gallus gallus gga-mir-135a-1 precursor miRNA

Literature search

8 open access papers mention gga-mir-135a-1
(10 sentences)

Sequence

23854 reads, 255 reads per million, 5 experiments

gccucacuguccugUAUGGCUUUUUAUUCCUAUGUGAuuauacaucccgcuucAUAUAGGGAUUGAAGCCGUGCAaggcgcugggguc
((((((.((((.(((((((((((..((((((((((((..............)))))))))))).))))))))))).)))).)))))).

Structure

-      c    c           UU            uuauac 
 gccuca uguc ugUAUGGCUUU  AUUCCUAUGUGA      a
 |||||| |||| |||||||||||  ||||||||||||       
 uggggu gcgg ACGUGCCGAAG  UAGGGAUAUAcu      u
c      c    a           -U            ucgccc 

Annotation confidence High

Genome context

chr12: 2998997-2999084 [-]

Mature gga-miR-135a-5p

• Accession: MIMAT0001099
• Description: Gallus gallus gga-miR-135a-5p mature miRNA
• Sequence: 15 - UAUGGCUUUUUAUUCCUAUGUGA - 37
• Evidence: experimental ; Illumina [2]

Mature gga-miR-135a-1-3p

• Accession: MIMAT0031036
• Description: Gallus gallus gga-miR-135a-1-3p mature miRNA
• Sequence: 54 - AUAUAGGGAUUGAAGCCGUGCA - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45