Stem-loop gga-mir-138b

Accession

MI0001228

Description

Gallus gallus gga-mir-138b precursor miRNA mir-138

Gene
family

RF00671; mir-138

Literature search

5 open access papers mention gga-mir-138b
(10 sentences)

Sequence

200082 reads, 138.0 reads per million, 237 experiments

guugcugcAGCUGGUGUUGUGAAUCAGGCCGacggcaagcgcuuccuacuauccgGCUAUUUCACUACACCAGGGUUGcauca
(.(((.((..(((((((.(((((...(((((..(((....)))..........)))))..))))).))))))).)).))).).

Structure

- u   u  AG       U     UCA     --------ac   a 
 g ugc gc  CUGGUGU GUGAA   GGCCG          ggc a
 | ||| ||  ||||||| |||||   |||||          |||  
 c acG UG  GACCACA CACUU   UCGgc          ucg g
a u   U  -G       U     -UA     cuaucauccu   c 

Annotation confidence High

Genome context

11: 2065526-2065608 [-]

Mature gga-miR-138b-5p

• Accession: MIMAT0062620
• Description: Gallus gallus gga-miR-138b-5p mature miRNA
• Sequence: 9 - AGCUGGUGUUGUGAAUCAGGCCG - 31
• Evidence: experimental ; Illumina [1]

Mature gga-miR-138b-3p

• Accession: MIMAT0031069
• Description: Gallus gallus gga-miR-138b-3p mature miRNA
• Sequence: 56 - GCUAUUUCACUACACCAGGGUUG - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45