Stem-loop gga-mir-1a-2

Accession

MI0001196

Description

Gallus gallus gga-mir-1a-2 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

28 open access papers mention gga-mir-1a-2
(199 sentences)

Sequence

7147436 reads, 76776 reads per million, 5 experiments

accugcucagagcACAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAuuuuuggcaggc
.((((((.((((.((((((((((((((((..(((((..(........)..))))).)))))))))))))))).)))).)))))).

Structure

a      c    c                AC     ug aca 
 ccugcu agag ACAUACUUCUUUAUGU  CCAUA  a   u
 |||||| |||| ||||||||||||||||  |||||  |    
 ggacgg uuuu UGUAUGAAGAAAUGUA  GGUau  u   a
c      u    A                -A     cg aac 

Annotation confidence Not enough data

Genome context

chr2: 102815860-102815944 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1a-2

Mature gga-miR-1a-3p

• Accession: MIMAT0001127
• Description: Gallus gallus gga-miR-1a-3p mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUA - 73
• Evidence: experimental ; Illumina [2]

Mature gga-miR-1a-2-5p

• Accession: MIMAT0026510
• Description: Gallus gallus gga-miR-1a-2-5p mature miRNA
• Sequence: 14 - ACAUACUUCUUUAUGUACCCAUA - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45