Stem-loop gga-mir-32

Accession

MI0001194

Description

Gallus gallus gga-mir-32 precursor miRNA mir-32

Gene
family

RF00666; mir-32

Literature search

4 open access papers mention gga-mir-32
(7 sentences)

Sequence

13704 reads, 250 reads per million, 5 experiments

ggagaUAUUGCACAUUACUAAGUUGCauguugucacggccucagugcAAUUUAGUGUGUGCGAUACUuuc
.(((.((((((((((.((((((((((((((((...))))....)))))))))))))))))))))))))..

Structure

-g   a          U            ----    u 
  gag UAUUGCACAU ACUAAGUUGCau    guug  
  ||| |||||||||| ||||||||||||    |||| c
  uUC AUAGCGUGUG UGAUUUAAcgug    cggc  
cu   -          -            acuc    a 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr2: 84498503-84498572 [-]

Mature gga-miR-32-5p

• Accession: MIMAT0001125
• Description: Gallus gallus gga-miR-32-5p mature miRNA
• Sequence: 6 - UAUUGCACAUUACUAAGUUGC - 26
• Evidence: experimental ; Illumina [2]

Mature gga-miR-32-3p

• Accession: MIMAT0026508
• Description: Gallus gallus gga-miR-32-3p mature miRNA
• Sequence: 48 - AAUUUAGUGUGUGCGAUACU - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45