Stem-loop gga-mir-196-2

Accession

MI0001190

Description

Gallus gallus gga-mir-196-2 precursor miRNA

Literature search

7 open access papers mention gga-mir-196-2
(17 sentences)

Sequence

281576 reads, 139.0 reads per million, 203 experiments

aacugcucugugguuUAGGUAGUUUCAUGUUGUUGGGgcuccaccuuucucuCUACAGCACGAAACUGCCUUAAUuacuucaguugauaucauc
(((((....((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..))))).........

Structure

---------     cucu      U          A      U    cucc 
         aacug    gugguu AGGUAGUUUC UGUUGU GGGg    a
         |||||    |||||| |||||||||| |||||| ||||    c
         uugac    cauUAA UCCGUCAAAG ACGACA Cucu    c
cuacuauag     --uu      U          C      U    cuuu 

Annotation confidence High

Genome context

2: 32553100-32553193 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-196-2

Mature gga-miR-196-5p

• Accession: MIMAT0001121
• Description: Gallus gallus gga-miR-196-5p mature miRNA
• Sequence: 16 - UAGGUAGUUUCAUGUUGUUGGG - 37
• Evidence: experimental ; cloned [2]

Mature gga-miR-196-3p

• Accession: MIMAT0051204
• Description: Gallus gallus gga-miR-196-3p mature miRNA
• Sequence: 53 - CUACAGCACGAAACUGCCUUAAU - 75
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45