Stem-loop rno-mir-181b-2

Accession

MI0000927

Description

Rattus norvegicus rno-mir-181b-2 precursor miRNA

Literature search

32 open access papers mention rno-mir-181b-2
(186 sentences)

Sequence

1798993 reads, 1414 reads per million, 505 experiments

ugauggcugcacucAACAUUCAUUGCUGUCGGUGGGUuugaaugucaaccaaCUCACUGGUCAAUGAAUGCAAAcugcgggccaaaaa
...((((((((.....(((((((((...(((((((((((((...)))...)))))))))).))))))))).....))).)))))....

Structure

-uga     -   cucAA         CUG          ---   a 
    uggcu gca     CAUUCAUUG   UCGGUGGGUu   uga  
    ||||| |||     |||||||||   ||||||||||   ||| u
    accgg cgu     GUAAGUAAC   GGUCACUCaa   acu  
aaaa     g   cAAAC         --U          cca   g 

Annotation confidence High

Genome context

chr3: 23151455-23151542 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-181b-2

Mature rno-miR-181b-5p

• Accession: MIMAT0000859
• Description: Rattus norvegicus rno-miR-181b-5p mature miRNA
• Sequence: 15 - AACAUUCAUUGCUGUCGGUGGGU - 37
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-181b-2-3p

• Accession: MIMAT0017140
• Description: Rattus norvegicus rno-miR-181b-2-3p mature miRNA
• Sequence: 53 - CUCACUGGUCAAUGAAUGCAAA - 74
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714