Stem-loop rno-mir-181b-1

Accession

MI0000926

Description

Rattus norvegicus rno-mir-181b-1 precursor miRNA

Literature search

32 open access papers mention rno-mir-181b-1
(188 sentences)

Sequence

1768724 reads, 1389 reads per million, 506 experiments

ccugugcagagaugauguuuacaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUugaacuguguagaaaagCUCACUGAACAAUGAAUGCAAcuguggccccgcuu
..((((((.......)))..)))..(((((((.....(((((((((...((((((((((...((....))...)))))))))).)))))))))....)))))))......

Structure

ccugugcagagaugauguuuacaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     GUAAGUAAC   AGUCACUCga   ga g
-------------------uucgcc       -cAAC         --A          aaa  u 

Annotation confidence High

Genome context

chr13: 54952903-54953012 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-181b-1

Mature rno-miR-181b-5p

• Accession: MIMAT0000859
• Description: Rattus norvegicus rno-miR-181b-5p mature miRNA
• Sequence: 36 - AACAUUCAUUGCUGUCGGUGGGU - 58
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-181b-1-3p

• Accession: MIMAT0017139
• Description: Rattus norvegicus rno-miR-181b-1-3p mature miRNA
• Sequence: 76 - CUCACUGAACAAUGAAUGCAA - 96
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714