Stem-loop rno-mir-133a

Accession

MI0000906

Description

Rattus norvegicus rno-mir-133a precursor miRNA

Literature search

98 open access papers mention rno-mir-133a
(673 sentences)

Sequence

31466817 reads, 19536 reads per million, 491 experiments

caaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcauuga
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure

-      uuu    a       AA  U  A        gccuc 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

Annotation confidence High

Genome context

chr18: 2052478-2052564 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-133a

Mature rno-miR-133a-5p

• Accession: MIMAT0017124
• Description: Rattus norvegicus rno-miR-133a-5p mature miRNA
• Sequence: 15 - AGCUGGUAAAAUGGAACCAAAU - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-133a-3p

• Accession: MIMAT0000839
• Description: Rattus norvegicus rno-miR-133a-3p mature miRNA
• Sequence: 52 - UUUGGUCCCCUUCAACCAGCUG - 73
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249