Stem-loop rno-mir-92a-1

Accession

MI0000878

Description

Rattus norvegicus rno-mir-92a-1 precursor miRNA

Literature search

35 open access papers mention rno-mir-92a-1
(180 sentences)

Sequence

3042826 reads, 3251 reads per million, 508 experiments

cuuucuacacAGGUUGGGAUUUGUCGCAAUGCUguguuucuguauagUAUUGCACUUGUCCCGGCCUGuugaguuugg
....((..((((((((((((..((.(((((((((((......)))))))))))))..))))))))))))..)).....

Structure

-cuuu  ac            UU  C           uu 
     cu  acAGGUUGGGAU  GU GCAAUGCUgug  u
     ||  ||||||||||||  || |||||||||||   
     ga  uGUCCGGCCCUG  CA CGUUAUgauau  c
gguuu  gu            UU  -           gu 

Annotation confidence High

Genome context

chr15: 100180586-100180663 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-92a-1

Mature rno-miR-92a-1-5p

• Accession: MIMAT0017107
• Description: Rattus norvegicus rno-miR-92a-1-5p mature miRNA
• Sequence: 11 - AGGUUGGGAUUUGUCGCAAUGCU - 33
• Evidence: experimental ; SOLiD [4]

Mature rno-miR-92a-3p

• Accession: MIMAT0000816
• Description: Rattus norvegicus rno-miR-92a-3p mature miRNA
• Sequence: 48 - UAUUGCACUUGUCCCGGCCUG - 68
• Evidence: experimental ; cloned [1-3], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68