Stem-loop rno-mir-19a

Accession

MI0000849

Description

Rattus norvegicus rno-mir-19a precursor miRNA

Literature search

38 open access papers mention rno-mir-19a
(264 sentences)

Sequence

15777 reads, 27 reads per million, 465 experiments

gcagcccucuguUCGUUUUGCAUAGUUGCACUacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((.(((((((((((((((((((((.......))))...))))))..))))))))))).))))).)).))))

Structure

    c  u     C           --      ---    ag 
gcag cc cuguU GUUUUGCAUAG  UUGCAC   Uaca  a
|||| || ||||| |||||||||||  ||||||   ||||  a
cguc gg gguAG CAAAACGUAUC  AACGUG   augu  g
    c  u     U           UA      Uug    aa 

Annotation confidence High

Genome context

chr15: 100180162-100180243 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-19a

Mature rno-miR-19a-5p

• Accession: MIMAT0017098
• Description: Rattus norvegicus rno-miR-19a-5p mature miRNA
• Sequence: 13 - UCGUUUUGCAUAGUUGCACU - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-19a-3p

• Accession: MIMAT0000789
• Description: Rattus norvegicus rno-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249