Stem-loop rno-mir-10a

Accession

MI0000841

Description

Rattus norvegicus rno-mir-10a precursor miRNA

Literature search

31 open access papers mention rno-mir-10a
(175 sentences)

Sequence

67521927 reads, 52128 reads per million, 510 experiments

gaccugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUGuaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUAuguaguugacauaaacacuccgcuca
....(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))).........

Structure

-----gacc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
acucgccuc   aau    uu        A    -     U          ugguguu 

Annotation confidence High

Genome context

chr10: 84165950-84166059 [+]

Mature rno-miR-10a-5p

• Accession: MIMAT0000782
• Description: Rattus norvegicus rno-miR-10a-5p mature miRNA
• Sequence: 22 - UACCCUGUAGAUCCGAAUUUGUG - 44
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-10a-3p

• Accession: MIMAT0004709
• Description: Rattus norvegicus rno-miR-10a-3p mature miRNA
• Sequence: 63 - CAAAUUCGUAUCUAGGGGAAUA - 84
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249