Stem-loop mmu-mir-335

Accession

MI0000817

Symbol

MGI: Mir335

Description

Mus musculus mmu-mir-335 precursor miRNA mir-335

Gene
family

RF00766; mir-335

Literature search

65 open access papers mention mmu-mir-335
(342 sentences)

Sequence

203571 reads, 1641 reads per million, 84 experiments

ucuuuugggcgggggUCAAGAGCAAUAACGAAAAAUGUuuguuuuucguaaaccgUUUUUCAUUAUUGCUCCUGACCcccucucauggguuauagcca
.....((((.((((((((.(((((((((.((((((((...((((.....)))))))))))).))))))))).)))))))).))))..(((....))).

Structure

--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc cccCCAGU CUCGUUAUU CUUUUUgc   caaa g
accgauauugggu    u        C         A        ---    u 

Annotation confidence High

Genome context

chr6: 30741299-30741396 [+]

Mature mmu-miR-335-5p

• Accession: MIMAT0000766
• Description: Mus musculus mmu-miR-335-5p mature miRNA
• Sequence: 16 - UCAAGAGCAAUAACGAAAAAUGU - 38
• Evidence: experimental ; cloned [3], Illumina [5-6]

Mature mmu-miR-335-3p

• Accession: MIMAT0004704
• Description: Mus musculus mmu-miR-335-3p mature miRNA
• Sequence: 56 - UUUUUCAUUAUUGCUCCUGACC - 77
• Evidence: experimental ; cloned [3], Illumina [5-6]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 15634332
   New human and mouse microRNA genes found by homology search
   "Weber MJ"
   "FEBS J (2005) 272:59-73


5. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


6. PubMed ID: 17687032
   Competing interactions between micro-RNAs determine neural progenitor survival and proliferation after ethanol exposure: evidence from an ex vivo model of the fetal cerebral cortical neuroepithelium
   "Sathyan P, Golden HB, Miranda RC"
   "J Neurosci (2007) 27:8546-8557