Stem-loop mmu-mir-19a

Accession

MI0000688

Symbol

MGI: Mir19a

Description

Mus musculus mmu-mir-19a precursor miRNA mir-19

Gene
family

RF00245; mir-19

Literature search

140 open access papers mention mmu-mir-19a
(782 sentences)

Sequence

51606 reads, 498 reads per million, 100 experiments

gcagcccucuguUAGUUUUGCAUAGUUGCACUACaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure

    c  u                 --      ---    ag 
gcag cc cuguUAGUUUUGCAUAG  UUGCAC   UACa  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

Annotation confidence High

Genome context

chr14: 115044000-115044081 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mmu-mir-19a

Mature mmu-miR-19a-5p

• Accession: MIMAT0004660
• Description: Mus musculus mmu-miR-19a-5p mature miRNA
• Sequence: 13 - UAGUUUUGCAUAGUUGCACUAC - 34
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-19a-3p

• Accession: MIMAT0000651
• Description: Mus musculus mmu-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

References

1. PubMed ID: 12554860
   Numerous microRNPs in neuronal cells containing novel microRNAs
   "Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G"
   "RNA (2003) 9:180-186


2. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009