miRBase entry: mmu-mir-135b

Stem-loop mmu-mir-135b


Accession
MI0000646
Symbol
MGI: Mir135b
Description
Mus musculus mmu-mir-135b precursor miRNA

Literature search
79 open access papers mention mmu-mir-135b
(461 sentences)

Sequence

51416 reads, 1108 reads per million, 55 experiments
cgcucugcuguggccUAUGGCUUUUCAUUCCUAUGUGAuugcugcuccgaacucAUGUAGGGCUAAAAGCCAUGGGcuacagugaggggcaagcucc
.((((((((((((((((((((((((...(((((((((((((......)))..))))))))))..)))))))))))))))))))..))))).......

Structure
------c     --                   CAU          --   cu 
       gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA  uug  g
       |||||  |||||||||||||||||||   ||||||||||  |||   
       cgggg  ugacaucGGGUACCGAAAA   GGGAUGUAcu  agc  c
ccucgaa     ag                   -UC          ca   cu 


Annotation confidence High
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Genome context
chr1: 132198088-132198184 [+]

Database links

Mature mmu-miR-135b-5p

Accession MIMAT0000612
Description Mus musculus mmu-miR-135b-5p mature miRNA
Sequence 16 - UAUGGCUUUUCAUUCCUAUGUGA - 38
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-135b-3p

Accession MIMAT0017044
Description Mus musculus mmu-miR-135b-3p mature miRNA
Sequence 55 - AUGUAGGGCUAAAAGCCAUGGG - 76
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009