Stem-loop mmu-mir-340

Accession

MI0000623

Symbol

MGI: Mir340

Description

Mus musculus mmu-mir-340 precursor miRNA mir-340

Gene
family

RF00761; mir-340

Literature search

38 open access papers mention mmu-mir-340
(352 sentences)

Sequence

375083 reads, 1388 reads per million, 107 experiments

caauuguacuuggugugaUUAUAAAGCAAUGAGACUGAUUgucauaugucguuugugggaUCCGUCUCAGUUACUUUAUAGCcauaccugguaucuua
.....(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....

Structure

caauu     u      a        -CAA      U    g     ug 
     guacu ggugug UUAUAAAG    UGAGAC GAUU ucaua  u
     ||||| |||||| ||||||||    |||||| |||| |||||  c
     uaugg ccauac GAUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      C        AUUG      C    -     uu 

Annotation confidence High

Genome context

chr11: 50069702-50069799 [+]

Mature mmu-miR-340-5p

• Accession: MIMAT0004651
• Description: Mus musculus mmu-miR-340-5p mature miRNA
• Sequence: 19 - UUAUAAAGCAAUGAGACUGAUU - 40
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature mmu-miR-340-3p

• Accession: MIMAT0000586
• Description: Mus musculus mmu-miR-340-3p mature miRNA
• Sequence: 61 - UCCGUCUCAGUUACUUUAUAGC - 82
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009