Stem-loop rno-mir-325

Accession

MI0000596

Description

Rattus norvegicus rno-mir-325 precursor miRNA

Literature search

11 open access papers mention rno-mir-325
(19 sentences)

Sequence

30211 reads, 35 reads per million, 307 experiments

auauagugcuugguuCCUAGUAGGUGCUCAGUAAGUGUuugugacauaauucgUUUAUUGAGCACCUCCUAUCAAucaagcacugugcuaggcucugg
.((((((((((((((..(((.((((((((((((((((..(........)..)))))))))))))))).)))..))))))))))))))...........

Structure

----------a              CC   U                Uu gug 
           uauagugcuugguu  UAG AGGUGCUCAGUAAGUG  u   a
           ||||||||||||||  ||| ||||||||||||||||  |    
           gugucacgaacuAA  AUC UCCACGAGUUAUUUgc  a   c
ggucucggauc              CU   C                uu aua 

Annotation confidence High

Genome context

chrX: 76334271-76334368 [-]

Mature rno-miR-325-5p

• Accession: MIMAT0000557
• Description: Rattus norvegicus rno-miR-325-5p mature miRNA
• Sequence: 16 - CCUAGUAGGUGCUCAGUAAGUGU - 38
• Evidence: experimental ; cloned [1-2], SOLiD [4]

Mature rno-miR-325-3p

• Accession: MIMAT0004639
• Description: Rattus norvegicus rno-miR-325-3p mature miRNA
• Sequence: 54 - UUUAUUGAGCACCUCCUAUCAA - 75
• Evidence: experimental ; cloned [3], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68