Stem-loop cbr-mir-250

Accession

MI0000537

Description

Caenorhabditis briggsae cbr-mir-250 precursor miRNA

Sequence

12691 reads, 1760.0 reads per million, 3 experiments

ucuucggaccacgCCUUCAGUUGCCUCGUGAUCCGccgaaucuguaauggacgaaUCACAGUCAACUGUUGGCACGGuccuugaagu
.(((((((((..(((..((((((.((.(((((.((((...........)).)).))))))).))))))..)))..)))))..)))).

Structure

u    --     ac   UU      C  C     C  -  gaau 
 cuuc  ggacc  gCC  CAGUUG CU GUGAU CG cc    c
 ||||  |||||  |||  |||||| || ||||| || ||    u
 gaag  ccuGG  CGG  GUCAAC GA CACUa gc gg    g
u    uu     CA   UU      U  -     a  a  uaau 

Annotation confidence Medium

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrV: 9339442-9339528 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-250

Mature cbr-miR-250-5p

• Accession: MIMAT0053548
• Description: Caenorhabditis briggsae cbr-miR-250-5p mature miRNA
• Sequence: 14 - CCUUCAGUUGCCUCGUGAUCCG - 35
• Evidence: not_experimental

Mature cbr-miR-250-3p

• Accession: MIMAT0000505
• Description: Caenorhabditis briggsae cbr-miR-250-3p mature miRNA
• Sequence: 56 - UCACAGUCAACUGUUGGCACGG - 77
• Evidence: not_experimental

References