miRBase entry: cbr-mir-81

Stem-loop cbr-mir-81


Accession
MI0000519
Description
Caenorhabditis briggsae cbr-mir-81 precursor miRNA mir-81
Gene
family?
RF00728; mir-81

Literature search
1 open access papers mention cbr-mir-81
(1 sentences)

Sequence

cgugauuaacggucgguuuucaccuugaucugagagcaauaaccagaaugcuuaucUGAGAUCAUCGUGAAAGCUAGUuguuacuucacu
.((((.((((((..(((((((((..((((((.((((((..........)))...))).))))))..)))))))))..))))))..)))).

Structure
c    -u      uc         cu      g   ---   auaa 
 guga  uaacgg  gguuuucac  ugaucu aga   gca    c
 ||||  ||||||  |||||||||  |||||| |||   |||     
 cacu  auuguU  UCGAAAGUG  ACUAGA Ucu   cgu    c
u    uc      GA         CU      G   auu   aaga 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrX: 4359691-4359780 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-81
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-81

Accession MIMAT0000488
Description Caenorhabditis briggsae cbr-miR-81 mature miRNA
Sequence 57 - UGAGAUCAUCGUGAAAGCUAGU - 78
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862