Stem-loop cbr-mir-79

Accession

MI0000517

Description

Caenorhabditis briggsae cbr-mir-79 precursor miRNA

Literature search

1 open access papers mention cbr-mir-79
(1 sentences)

Sequence

4677 reads, 510.0 reads per million, 3 experiments

agaacauucuccgauCUUUGGUGAUUCAGCUUAAAUGAuagaauucagacgucuucAUAAAGCUAGGUUACCAAAGCUcggcguuccaguucg
.((((...(.((((.(((((((((((.(((((..((((.(((.........))))))).))))).))))))))))).)))).).....)))).

Structure

a    --auu u    u           C     AA    u   auu 
 gaac     c ccga CUUUGGUGAUU AGCUU  AUGA aga   c
 ||||     | |||| ||||||||||| |||||  |||| |||   a
 cuug     g ggcU GAAACCAUUGG UCGAA  UAcu ucu   g
g    accuu c    C           A     -A    -   gca 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrI: 1849413-1849505 [+]

Mature cbr-miR-79-5p

• Accession: MIMAT0053534
• Description: Caenorhabditis briggsae cbr-miR-79-5p mature miRNA
• Sequence: 16 - CUUUGGUGAUUCAGCUUAAAUGA - 38
• Evidence: not_experimental

Mature cbr-miR-79-3p

• Accession: MIMAT0000486
• Description: Caenorhabditis briggsae cbr-miR-79-3p mature miRNA
• Sequence: 57 - AUAAAGCUAGGUUACCAAAGCU - 78
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862