Stem-loop cbr-mir-48

Accession

MI0000502

Description

Caenorhabditis briggsae cbr-mir-48 precursor miRNA

Literature search

4 open access papers mention cbr-mir-48
(18 sentences)

Sequence

69841 reads, 10196.0 reads per million, 3 experiments

agaaccauucgggauguUGAGGUAGGCUCAGUAGAUGCGAggagauccaccauuccucACAUCGUCUGUCCUAACUCGCCUucccuugugcuuca
.(((.(((..((((.(.((((.((((..(((..((((.((((((........)))))).))))..))).)))).)))).).))))..))).))).

Structure

a   c   uc    u u    G    CU   UA    C      auc 
 gaa cau  ggga g UGAG UAGG  CAG  GAUG GAggag   c
 ||| |||  |||| | |||| ||||  |||  |||| ||||||    
 cuu gug  cccu C GCUC AUCC  GUC  CUAC cuccuu   a
a   c   uu    U C    A    -U   UG    A      acc 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrV: 14733130-14733224 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-48

Mature cbr-miR-48-5p

• Accession: MIMAT0000473
• Description: Caenorhabditis briggsae cbr-miR-48-5p mature miRNA
• Sequence: 18 - UGAGGUAGGCUCAGUAGAUGCGA - 40
• Evidence: not_experimental

Mature cbr-miR-48-3p

• Accession: MIMAT0053521
• Description: Caenorhabditis briggsae cbr-miR-48-3p mature miRNA
• Sequence: 59 - ACAUCGUCUGUCCUAACUCGCCU - 81
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862