miRBase entry: cbr-mir-48

Stem-loop cbr-mir-48

Accession

MI0000502

Description

Caenorhabditis briggsae cbr-mir-48 precursor miRNA

Sequence

agaaccauucgggauguUGAGGUAGGCUCAGUAGAUGCGAggagauccaccauuccucacaucgucuguccuaacucgccuucccuugugcuuca
.(((.(((..((((.(.((((.((((..(((..((((.((((((........)))))).))))..))).)))).)))).).))))..))).))).

Structure

a   c   uc    u u    G    CU   UA    C      auc 
 gaa cau  ggga g UGAG UAGG  CAG  GAUG GAggag   c
 ||| |||  |||| | |||| ||||  |||  |||| ||||||    
 cuu gug  cccu c gcuc aucc  guc  cuac cuccuu   a
a   c   uu    u c    a    -u   ug    a      acc

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrV: 14733130-14733224 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-48

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-48

Accession	MIMAT0000473
Description	Caenorhabditis briggsae cbr-miR-48 mature miRNA
Sequence	18 - UGAGGUAGGCUCAGUAGAUGCGA - 40
Evidence	not_experimental

References

PubMed ID: 11679671
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
"Lau NC, Lim LP, Weinstein EG, Bartel DP"
"Science (2001) 294:858-862