miRBase entry: cbr-mir-44

Stem-loop cbr-mir-44


Accession
MI0000497
Description
Caenorhabditis briggsae cbr-mir-44 precursor miRNA


Sequence

gagaagggccgaucuggaugugcucguuagucauagacgaaucacacuugaaaggucauaUGACUAGAGACACAUUCAGCUuggccuggaucuca
((((.(((((((.(((((((((.((.((((((((((((...(((....)))...))).))))))))).))))))))))).)))))))...)))).

Structure
-    --a       u         c  g         -   gaa   c 
 gaga   gggccga cuggaugug uc uuagucaua gac   uca a
 ||||   ||||||| ||||||||| || ||||||||| |||   |||  
 cucu   uccgguU GACUUACAC AG GAUCAGUau cug   agu c
a    agg       C         -  A         a   gaa   u 


Annotation confidence Not enough data
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Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrII: 8891054-8891148 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cbr-mir-44
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-44

Accession MIMAT0000469
Description Caenorhabditis briggsae cbr-miR-44 mature miRNA
Sequence 61 - UGACUAGAGACACAUUCAGCU - 81
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862