miRBase entry: mmu-mir-299a

Stem-loop mmu-mir-299a


Accession
MI0000399
Symbol
MGI: Mir299a
Description
Mus musculus mmu-mir-299a precursor miRNA mir-299
Gene
family?
RF00756; mir-299

Literature search
25 open access papers mention mmu-mir-299a
(94 sentences)

Sequence

33601 reads, 658 reads per million, 87 experiments
aagaaaUGGUUUACCGUCCCACAUACAUuuugaguaugUAUGUGGGACGGUAAACCGCUUcuu
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))

Structure
     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ug 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr12: 109710638-109710700 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from mmu-mir-299a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-299a-5p

Accession MIMAT0000377
Description Mus musculus mmu-miR-299a-5p mature miRNA
Sequence 7 - UGGUUUACCGUCCCACAUACAU - 28
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-299a-3p

Accession MIMAT0004577
Description Mus musculus mmu-miR-299a-3p mature miRNA
Sequence 39 - UAUGUGGGACGGUAAACCGCUU - 60
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009